added dups parameter to chimera.uchime. working on make.contigs command.

[mothur.git] / kruskalwalliscommand.h

diff --git a/kruskalwalliscommand.h b/kruskalwalliscommand.h
index e3bf100bd2c8b468701f4aaee17c3807758d3f56..da1166ed16a787adfaaf8a2e183afc8724f6f0a0 100644 (file)
--- a/kruskalwalliscommand.h
+++ b/kruskalwalliscommand.h
@@ -9,6 +9,8 @@
 #define        KRUSKALWALLISCOMMAND_H
 
 #include "command.hpp"
+#include "inputdata.h"
+#include "sharedrabundvector.h"
 
 
 class KruskalWallisCommand : public Command {
@@ -36,11 +38,14 @@ public:
     int execute(); 
        void help() { m->mothurOut(getHelpString()); }
     void assignRank(vector<groupRank>&);
+    void assignValue(vector<groupRank>&);
     
     
 private:
-    string outputDir;
+    string outputDir, sharedfile, groups;
     bool abort;
+    set<string> labels;
+    vector<string> outputNames, Groups;
     vector<int> counts;
     vector<double> rankSums;
     vector<double> rankMeans;