working on chimera.perseus. made removeConfidences function smarter. Fixed bug in...

[mothur.git] / kmerdb.hpp

diff --git a/kmerdb.hpp b/kmerdb.hpp
index b64412d259a85870c57253249a4e355193476c9a..62d4836a066f9bc10cf1a041e21cb07e1e0a1f84 100644 (file)
--- a/kmerdb.hpp
+++ b/kmerdb.hpp
@@ -26,12 +26,17 @@ class KmerDB : public Database {
        
 public:
        KmerDB(string, int);
+       KmerDB(const KmerDB& kdb) : kmerSize(kdb.kmerSize), maxKmer(kdb.maxKmer), count(kdb.count), kmerDBName(kdb.kmerDBName), kmerLocations(kdb.kmerLocations), Database(kdb) {}
+       KmerDB();
        ~KmerDB();
        
        void generateDB();
        void addSequence(Sequence);
        vector<int> findClosestSequences(Sequence*, int);
        void readKmerDB(ifstream&);
+       int getCount(int);  //returns number of sequences with that kmer number
+       vector<int> getSequencesWithKmer(int);  //returns vector of sequences that contain kmer passed in
+       int getMaxKmer() { return maxKmer; }
        
 private: