some changes while testing 1.9

[mothur.git] / kmerdb.hpp

diff --git a/kmerdb.hpp b/kmerdb.hpp
index b64412d259a85870c57253249a4e355193476c9a..513f3f07d64bbd267e11bd16777fae5aadb97a5c 100644 (file)
--- a/kmerdb.hpp
+++ b/kmerdb.hpp
@@ -26,12 +26,21 @@ class KmerDB : public Database {
        
 public:
        KmerDB(string, int);
+       KmerDB();
        ~KmerDB();
        
        void generateDB();
        void addSequence(Sequence);
        vector<int> findClosestSequences(Sequence*, int);
        void readKmerDB(ifstream&);
+       int getCount(int);  //returns number of sequences with that kmer number
+       vector<int> getSequencesWithKmer(int);  //returns vector of sequences that contain kmer passed in
+       int getMaxKmer() { return maxKmer; }
+       
+       #ifdef USE_MPI  
+       int MPISend(int); //just sends kmersize
+       int MPIRecv(int);
+       #endif
        
 private: