public:
KmerDB(string, int);
+ KmerDB();
~KmerDB();
void generateDB();
void addSequence(Sequence);
vector<int> findClosestSequences(Sequence*, int);
void readKmerDB(ifstream&);
+ int getCount(int); //returns number of sequences with that kmer number
+ vector<int> getSequencesWithKmer(int); //returns vector of sequences that contain kmer passed in
+ int getMaxKmer() { return maxKmer; }
+
+ #ifdef USE_MPI
+ int MPISend(int); //just sends kmersize
+ int MPIRecv(int);
+ #endif
private: