* Created by Pat Schloss on 12/16/08.
* Copyright 2008 Patrick D. Schloss. All rights reserved.
*
+ * This class is a child class of the Database class, which stores the template sequences as a kmer table and provides
+ * a method of searching the kmer table for the sequence with the most kmers in common with a query sequence.
+ * kmerLocations is the primary storage variable that is a two-dimensional vector where each row represents the
+ * different number of kmers and each column contains the index to sequences that use that kmer.
+ *
+ * Construction of an object of this type will first look for an appropriately named database file and if it is found
+ * then will read in the database file (readKmerDB), otherwise it will generate one and store the data in memory
+ * (generateKmerDB)
+
*/
#include "mothur.h"
public:
KmerDB(string, int);
- Sequence* findClosestSequence(Sequence*);
+ ~KmerDB();
+ Sequence findClosestSequence(Sequence*);
private:
void generateKmerDB(string);