changed confidence scores calculation in bayesian

[mothur.git] / jackknife.cpp

diff --git a/jackknife.cpp b/jackknife.cpp
index 1082465756916c6bebca1e74114f6989ed14ac33..7f613665eb3db230c5c14c9240faa0e482f450be 100644 (file)
--- a/jackknife.cpp
+++ b/jackknife.cpp
@@ -25,7 +25,7 @@ void Jackknife::getAMatrix(void){
                }
        }
        catch(exception& e) {
-               errorOut(e, "Jackknife", "getAMatrix");
+               m->errorOut(e, "Jackknife", "getAMatrix");
                exit(1);
        }
 }
@@ -53,7 +53,7 @@ double Jackknife::CN(double z){
                return n;
        }
        catch(exception& e) {
-               errorOut(e, "Jackknife", "CN");
+               m->errorOut(e, "Jackknife", "CN");
                exit(1);
        }
 }
@@ -122,7 +122,7 @@ EstOutput Jackknife::getValues(SAbundVector* rank){
                        }
                        ci = 1.96 * sqrt(ci - jack);
                }
-               else if(k=1){
+               else if(k==1){
                        jack = N[1];
                        ci = 1.96*sqrt(variance[1]);
                }else{
@@ -144,7 +144,7 @@ EstOutput Jackknife::getValues(SAbundVector* rank){
                return data;
        }
        catch(exception& e) {
-               errorOut(e, "Jackknife", "getValues");
+               m->errorOut(e, "Jackknife", "getValues");
                exit(1);
        }
 }