changed file divide for trim.seqs

[mothur.git] / jackknife.cpp

diff --git a/jackknife.cpp b/jackknife.cpp
index 35f0910fab36ca781d2f7653461b0ea79771adf4..150b7cd6df554711f8b85fdd22a841fe6cd6c6c5 100644 (file)
--- a/jackknife.cpp
+++ b/jackknife.cpp
@@ -25,7 +25,7 @@ void Jackknife::getAMatrix(void){
                }
        }
        catch(exception& e) {
-               errorOut(e, "Jackknife", "getAMatrix");
+               m->errorOut(e, "Jackknife", "getAMatrix");
                exit(1);
        }
 }
@@ -53,7 +53,7 @@ double Jackknife::CN(double z){
                return n;
        }
        catch(exception& e) {
-               errorOut(e, "Jackknife", "CN");
+               m->errorOut(e, "Jackknife", "CN");
                exit(1);
        }
 }
@@ -67,7 +67,7 @@ EstOutput Jackknife::getValues(SAbundVector* rank){
        
                double jack, jacklci, jackhci;
        
-               double maxRank = (double)rank->getMaxRank();
+               int maxRank = (double)rank->getMaxRank();
                int S = rank->getNumBins();
 
                double N[maxOrder+1];
@@ -144,7 +144,7 @@ EstOutput Jackknife::getValues(SAbundVector* rank){
                return data;
        }
        catch(exception& e) {
-               errorOut(e, "Jackknife", "getValues");
+               m->errorOut(e, "Jackknife", "getValues");
                exit(1);
        }
 }