fixed bug with getting sharedrabunds for venn, heatmap and tree.shared commands,...

[mothur.git] / inputdata.h

diff --git a/inputdata.h b/inputdata.h
index 46d1655cdd62f4578b5bf82a114143a31454a689..f21daec045d67d9bf710ee6dce5e26ab018e1d51 100644 (file)
--- a/inputdata.h
+++ b/inputdata.h
@@ -1,11 +1,10 @@
 #ifndef INPUTDATA_H
 #define INPUTDATA_H
 
-#include <iostream>
-#include <iomanip>
-#include <string>
-#include <fstream>
+#include "mothur.h"
 #include "ordervector.hpp"
+#include "sharedlistvector.h"
+#include "sharedordervector.h"
 #include "listvector.hpp"
 
 
@@ -18,18 +17,25 @@ public:
        InputData(string, string, string);
        ~InputData();
        ListVector* getListVector();
+       SharedListVector* getSharedListVector();
        OrderVector* getOrderVector();
+       SharedOrderVector* getSharedOrderVector();
        SAbundVector* getSAbundVector();
+       RAbundVector* getRAbundVector();
+       vector<SharedRAbundVector*> getSharedRAbundVectors();
        
 private:
        string format;
        ifstream fileHandle;
        DataVector* input;
        ListVector* list;
+       SharedListVector* SharedList;
        OrderVector* output;
+       SharedOrderVector* SharedOrder;
        SAbundVector* sabund;
+       RAbundVector* rabund;
        map<string,int> orderMap;
 };
 
 
-#endif
\ No newline at end of file
+#endif