added help for heatmap.sim

[mothur.git] / inputdata.h

diff --git a/inputdata.h b/inputdata.h
index b6912b3c8bef9803dae6aad648f97a80b3844b5b..e9deb9d202c1935c222e4f392f85f3f2781d81ca 100644 (file)
--- a/inputdata.h
+++ b/inputdata.h
@@ -1,18 +1,13 @@
 #ifndef INPUTDATA_H
 #define INPUTDATA_H
 
-#include <iostream>
-#include <iomanip>
-#include <string>
-#include <fstream>
+#include "mothur.h"
 #include "ordervector.hpp"
 #include "sharedlistvector.h"
 #include "sharedordervector.h"
 #include "listvector.hpp"
 
 
-using namespace std;
-
 class InputData {
        
 public:
@@ -24,6 +19,8 @@ public:
        OrderVector* getOrderVector();
        SharedOrderVector* getSharedOrderVector();
        SAbundVector* getSAbundVector();
+       RAbundVector* getRAbundVector();
+       vector<SharedRAbundVector*> getSharedRAbundVectors();
        
 private:
        string format;
@@ -34,6 +31,7 @@ private:
        OrderVector* output;
        SharedOrderVector* SharedOrder;
        SAbundVector* sabund;
+       RAbundVector* rabund;
        map<string,int> orderMap;
 };