added help for heatmap.sim

[mothur.git] / inputdata.h

diff --git a/inputdata.h b/inputdata.h
index abb343e98eb02677006af4316fbc10e4693f3a2a..e9deb9d202c1935c222e4f392f85f3f2781d81ca 100644 (file)
--- a/inputdata.h
+++ b/inputdata.h
@@ -1,17 +1,13 @@
 #ifndef INPUTDATA_H
 #define INPUTDATA_H
 
-#include <iostream>
-#include <iomanip>
-#include <string>
-#include <fstream>
+#include "mothur.h"
 #include "ordervector.hpp"
 #include "sharedlistvector.h"
+#include "sharedordervector.h"
 #include "listvector.hpp"
 
 
-using namespace std;
-
 class InputData {
        
 public:
@@ -21,7 +17,10 @@ public:
        ListVector* getListVector();
        SharedListVector* getSharedListVector();
        OrderVector* getOrderVector();
+       SharedOrderVector* getSharedOrderVector();
        SAbundVector* getSAbundVector();
+       RAbundVector* getRAbundVector();
+       vector<SharedRAbundVector*> getSharedRAbundVectors();
        
 private:
        string format;
@@ -30,7 +29,9 @@ private:
        ListVector* list;
        SharedListVector* SharedList;
        OrderVector* output;
+       SharedOrderVector* SharedOrder;
        SAbundVector* sabund;
+       RAbundVector* rabund;
        map<string,int> orderMap;
 };