added calcs to tree.shared. working on remove.rare command

[mothur.git] / indicatorcommand.h

diff --git a/indicatorcommand.h b/indicatorcommand.h
index 1a41ffd33c1e0a175ed6560b300ba9469fa20cb8..ae7499764dd7f32206ad36c01fdbd98fff3d8592 100644 (file)
--- a/indicatorcommand.h
+++ b/indicatorcommand.h
@@ -34,7 +34,8 @@ private:
        GlobalData* globaldata;
        ReadTree* read;
        TreeMap* treeMap;
-       string treefile, sharedfile, relabundfile, groups, label, inputFileName, outputDir;
+       GroupMap* designMap;
+       string treefile, sharedfile, relabundfile, groups, label, inputFileName, outputDir, designfile;
        bool abort;
        vector<string> outputNames, Groups;
        map<string, vector<string> > outputTypes;
@@ -47,7 +48,7 @@ private:
        set<string> getDescendantList(Tree*&, int, map<int, set<string> >, map<int, set<int> >&);
        vector<float> getValues(vector< vector<SharedRAbundVector*> >&);
        vector<float> getValues(vector< vector<SharedRAbundFloatVector*> >&);
-       map<int, float> getLengthToLeaf(Tree*&);
+       map<int, float> getDistToRoot(Tree*&);
        
 };