}
m->runParse = true;
+ m->Groups.clear();
+ m->namesOfGroups.clear();
+ m->Treenames.clear();
+ m->names.clear();
vector<string> tempOutNames;
outputTypes["tree"] = tempOutNames;
// reading tree info //
/***************************************************/
string groupfile = "";
+ m->setTreeFile(treefile);
Tree* tree = new Tree(treefile); delete tree; //extracts names from tree to make faked out groupmap
treeMap = new TreeMap();
bool mismatch = false;