fixed bug in cluster.split with classify method

[mothur.git] / helpcommand.cpp

diff --git a/helpcommand.cpp b/helpcommand.cpp
index 93def59137b8ecadb3e45b26ff3fac35bc976405..608ff3e275a1c7240975b506961d3a7ecf78fa79 100644 (file)
--- a/helpcommand.cpp
+++ b/helpcommand.cpp
@@ -11,12 +11,9 @@
 
 //**********************************************************************************************************************
 
-HelpCommand::HelpCommand(string option){
-
-       
-       if (option != "") { cout << "There are no valid parameters for the help() command." << endl;  }
+HelpCommand::HelpCommand(string option)  {
        
-       validCommands = new CommandFactory();
+       validCommands = CommandFactory::getInstance();
 }
 
 //**********************************************************************************************************************
@@ -28,11 +25,9 @@ HelpCommand::~HelpCommand(){}
 int HelpCommand::execute(){
 
        validCommands->printCommands(cout);
-       cout << "For more information about a specific command type 'commandName(help)' i.e. 'read.dist(help)'" << endl;
-       
-       delete validCommands;
+       m->mothurOut("For more information about a specific command type 'commandName(help)' i.e. 'read.dist(help)'"); m->mothurOutEndLine();
        
-       cout << endl << "For further assistance please refer to the Mothur manual on our wiki at http://schloss.micro.umass.edu/mothur/, or contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+       m->mothurOutEndLine(); m->mothurOut("For further assistance please refer to the Mothur manual on our wiki at http://www.mothur.org/wiki, or contact Pat Schloss at mothur.bugs@gmail.com.\n");
        return 0;
 }