fixed problem with class.fy.seqs where group totals did not add up. added constructo...

[mothur.git] / helpcommand.cpp

diff --git a/helpcommand.cpp b/helpcommand.cpp
index e0ef2a3ebdf20de0d8a7e3ede3ad4a5f14857da1..608ff3e275a1c7240975b506961d3a7ecf78fa79 100644 (file)
--- a/helpcommand.cpp
+++ b/helpcommand.cpp
@@ -11,10 +11,7 @@
 
 //**********************************************************************************************************************
 
-HelpCommand::HelpCommand(string option){
-
-       
-       if (option != "") { mothurOut("There are no valid parameters for the help() command."); mothurOutEndLine();  }
+HelpCommand::HelpCommand(string option)  {
        
        validCommands = CommandFactory::getInstance();
 }
@@ -28,9 +25,9 @@ HelpCommand::~HelpCommand(){}
 int HelpCommand::execute(){
 
        validCommands->printCommands(cout);
-       mothurOut("For more information about a specific command type 'commandName(help)' i.e. 'read.dist(help)'"); mothurOutEndLine();
+       m->mothurOut("For more information about a specific command type 'commandName(help)' i.e. 'read.dist(help)'"); m->mothurOutEndLine();
        
-       mothurOutEndLine(); mothurOut("For further assistance please refer to the Mothur manual on our wiki at http://www.mothur.org/wiki, or contact Pat Schloss at mothur.bugs@gmail.com.\n");
+       m->mothurOutEndLine(); m->mothurOut("For further assistance please refer to the Mothur manual on our wiki at http://www.mothur.org/wiki, or contact Pat Schloss at mothur.bugs@gmail.com.\n");
        return 0;
 }