//**********************************************************************************************************************
-HelpCommand::HelpCommand(string option){
- globaldata = GlobalData::getInstance();
+HelpCommand::HelpCommand(string option) {
- if (option != "") { cout << "There are no valid parameters for the help() command." << endl; }
-
- validCommands = new ValidCommands();
- }
+ validCommands = CommandFactory::getInstance();
+}
//**********************************************************************************************************************
int HelpCommand::execute(){
validCommands->printCommands(cout);
- cout << "For more information about a specific command type 'commandName(help)' i.e. 'read.dist(help)'" << endl;
-
- delete validCommands;
+ m->mothurOut("For more information about a specific command type 'commandName(help)' i.e. 'read.dist(help)'"); m->mothurOutEndLine();
- cout << endl << "For further assistance please refer to the Mothur manual on our wiki at http://schloss.micro.umass.edu/mothur/, or contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+ m->mothurOutEndLine(); m->mothurOut("For further assistance please refer to the Mothur manual on our wiki at http://www.mothur.org/wiki, or contact Pat Schloss at mothur.bugs@gmail.com.\n");
return 0;
}