working on megastats

[mothur.git] / helpcommand.cpp

diff --git a/helpcommand.cpp b/helpcommand.cpp
index ba4f53d942b899d4dc02d65c8acc68a63fdd45f7..36ce2b760e266a790bba56e9b4d5adf5f5b493a5 100644 (file)
--- a/helpcommand.cpp
+++ b/helpcommand.cpp
@@ -11,12 +11,10 @@
 
 //**********************************************************************************************************************
 
-HelpCommand::HelpCommand(string option){
-
+HelpCommand::HelpCommand(string option)  {
        
-       if (option != "") { mothurOut("There are no valid parameters for the help() command."); mothurOutEndLine();  }
+       validCommands = CommandFactory::getInstance();
        
-       validCommands = new CommandFactory();
 }
 
 //**********************************************************************************************************************
@@ -26,13 +24,10 @@ HelpCommand::~HelpCommand(){}
 //**********************************************************************************************************************
 
 int HelpCommand::execute(){
-
        validCommands->printCommands(cout);
-       mothurOut("For more information about a specific command type 'commandName(help)' i.e. 'read.dist(help)'"); mothurOutEndLine();
-       
-       delete validCommands;
+       m->mothurOut("For more information about a specific command type 'commandName(help)' i.e. 'read.dist(help)'"); m->mothurOutEndLine();
        
-       mothurOutEndLine(); mothurOut("For further assistance please refer to the Mothur manual on our wiki at http://www.mothur.org/wiki, or contact Pat Schloss at pschloss@umich.edu.\n");
+       m->mothurOutEndLine(); m->mothurOut("For further assistance please refer to the Mothur manual on our wiki at http://www.mothur.org/wiki, or contact Pat Schloss at mothur.bugs@gmail.com.\n");
        return 0;
 }