working on megastats

[mothur.git] / helpcommand.cpp

diff --git a/helpcommand.cpp b/helpcommand.cpp
index 4a97342c27f801ea7bb959f0c411ace6f33393dc..36ce2b760e266a790bba56e9b4d5adf5f5b493a5 100644 (file)
--- a/helpcommand.cpp
+++ b/helpcommand.cpp
@@ -11,10 +11,10 @@
 
 //**********************************************************************************************************************
 
-HelpCommand::HelpCommand(string option){
+HelpCommand::HelpCommand(string option)  {
+       
+       validCommands = CommandFactory::getInstance();
        
-       if (option != "") { cout << "There are no valid parameters for the help() command." << endl;  } 
-       validCommands = new ValidCommands();
 }
 
 //**********************************************************************************************************************
@@ -24,13 +24,10 @@ HelpCommand::~HelpCommand(){}
 //**********************************************************************************************************************
 
 int HelpCommand::execute(){
-
        validCommands->printCommands(cout);
-       cout << "For more information about a specific command type 'commandName(help)' i.e. 'read.dist(help)'" << endl;
-       
-       delete validCommands;
+       m->mothurOut("For more information about a specific command type 'commandName(help)' i.e. 'read.dist(help)'"); m->mothurOutEndLine();
        
-       cout << endl << "For further assistance please refer to the Mothur manual on our wiki at http://schloss.micro.umass.edu/mothur/, or contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+       m->mothurOutEndLine(); m->mothurOut("For further assistance please refer to the Mothur manual on our wiki at http://www.mothur.org/wiki, or contact Pat Schloss at mothur.bugs@gmail.com.\n");
        return 0;
 }