public:
HeatMapSimCommand(string);
+ HeatMapSimCommand();
~HeatMapSimCommand();
+ vector<string> getRequiredParameters();
+ vector<string> getValidParameters();
+ vector<string> getRequiredFiles();
+ map<string, vector<string> > getOutputFiles() { return outputTypes; }
int execute();
void help();
bool abort, allLines;
set<string> labels; //holds labels to be used
string format, groups, label, calc, phylipfile, columnfile, namefile, outputDir;
- vector<string> Estimators, Groups;
+ vector<string> Estimators, Groups, outputNames;
+ map<string, vector<string> > outputTypes;
int runCommandShared();
int runCommandDist();