map<string, string>::iterator it;
bool abort, allLines;
set<string> labels; //holds labels to be used
- string format, groups, label, calc;
- vector<string> Estimators, Groups;
+ string format, groups, label, calc, phylipfile, columnfile, namefile, outputDir;
+ vector<string> Estimators, Groups, outputNames;
+
+ int runCommandShared();
+ int runCommandDist();
};