added warning about merging with something above cutoff to cluster. working on chimeras

[mothur.git] / heatmapsimcommand.h

diff --git a/heatmapsimcommand.h b/heatmapsimcommand.h
index 595f918f442352aea7dd94d6e62065b28398c6ca..838babdbe388b69b57d56f01fa3d1e508e18faae 100644 (file)
--- a/heatmapsimcommand.h
+++ b/heatmapsimcommand.h
@@ -39,8 +39,11 @@ private:
        map<string, string>::iterator it;
        bool abort, allLines;
        set<string> labels; //holds labels to be used
-       string format, groups, label, calc;
+       string format, groups, label, calc, phylipfile, columnfile, namefile, outputDir;
        vector<string> Estimators, Groups;
+       
+       int runCommandShared();
+       int runCommandDist();
 
 
 };