added warning about merging with something above cutoff to cluster. working on chimeras

[mothur.git] / heatmapsimcommand.h

diff --git a/heatmapsimcommand.h b/heatmapsimcommand.h
index 091da26af7db4cf4e9302c0e9a9d0e8a4587f5de..838babdbe388b69b57d56f01fa3d1e508e18faae 100644 (file)
--- a/heatmapsimcommand.h
+++ b/heatmapsimcommand.h
@@ -38,10 +38,12 @@ private:
        map<string, string> parameters;
        map<string, string>::iterator it;
        bool abort, allLines;
-       set<int> lines; //hold lines to be used
        set<string> labels; //holds labels to be used
-       string format, groups, line, label, calc;
+       string format, groups, label, calc, phylipfile, columnfile, namefile, outputDir;
        vector<string> Estimators, Groups;
+       
+       int runCommandShared();
+       int runCommandDist();
 
 
 };