added help for heatmap.sim

[mothur.git] / heatmapcommand.h

diff --git a/heatmapcommand.h b/heatmapcommand.h
index 5eeae265471785c8d582e7b250c76046554711e7..fc50554c601c3c897f949775de7743c94cf33c9a 100644 (file)
--- a/heatmapcommand.h
+++ b/heatmapcommand.h
@@ -13,14 +13,13 @@
 
 #include "command.hpp"
 #include "inputdata.h"
-#include "readmatrix.hpp"
+#include "readotu.h"
 #include "sharedlistvector.h"
 #include "heatmap.h"
-
+#include "rabundvector.hpp"
 
 class GlobalData;
 
-
 class HeatMapCommand : public Command {
 
 public:
@@ -30,15 +29,13 @@ public:
        
 private:
        GlobalData* globaldata;
-       ReadMatrix* read;
+       ReadOTUFile* read;
        InputData* input;
        SharedListVector* SharedList;
-       SharedOrderVector* order;
-       OrderVector* ordersingle;
+       RAbundVector* rabund;
+       vector<SharedRAbundVector*> lookup;
        HeatMap* heatmap;
        string format;
-       
-       void setGroups();
 
 };