public:
HeatMapCommand(string);
+ HeatMapCommand();
~HeatMapCommand();
+ vector<string> getRequiredParameters();
+ vector<string> getValidParameters();
+ vector<string> getRequiredFiles();
+ map<string, vector<string> > getOutputFiles() { return outputTypes; }
int execute();
void help();
SharedListVector* SharedList;
RAbundVector* rabund;
vector<SharedRAbundVector*> lookup;
+ vector<SharedRAbundFloatVector*> lookupFloat;
HeatMap* heatmap;
bool abort, allLines;
set<string> labels; //holds labels to be used
string format, groups, sorted, scale, label, outputDir;
- vector<string> Groups;
+ vector<string> Groups, outputNames;
+ map<string, vector<string> > outputTypes;
+ int numOTU, fontSize;
};