class HeatMapCommand : public Command {
public:
- HeatMapCommand();
+ HeatMapCommand(string);
~HeatMapCommand();
int execute();
+ void help();
private:
GlobalData* globaldata;
RAbundVector* rabund;
vector<SharedRAbundVector*> lookup;
HeatMap* heatmap;
- string format;
+
+ bool abort, allLines;
+ set<string> labels; //holds labels to be used
+ string format, groups, sorted, scale, label, outputDir;
+ vector<string> Groups;
+
};