RAbundVector* rabund;
vector<SharedRAbundVector*> lookup;
HeatMap* heatmap;
- OptionParser* parser;
- map<string, string> parameters;
- map<string, string>::iterator it;
+
bool abort, allLines;
- set<int> lines; //hold lines to be used
set<string> labels; //holds labels to be used
- string format, groups, sorted, scale, line, label;
+ string format, groups, sorted, scale, label, outputDir;
vector<string> Groups;