modified mpi code to save ram by writing out every 10 seqs.

[mothur.git] / heatmapcommand.h

diff --git a/heatmapcommand.h b/heatmapcommand.h
index 2ae9882db4ff0c5390293cdfd6ea0e2b2c496c11..47838d80bb6f8cded11793bc7ed7ef942f9f8ec9 100644 (file)
--- a/heatmapcommand.h
+++ b/heatmapcommand.h
@@ -36,14 +36,11 @@ private:
        RAbundVector* rabund;
        vector<SharedRAbundVector*> lookup;
        HeatMap* heatmap;
-       OptionParser* parser;
-       map<string, string> parameters;
-       map<string, string>::iterator it;
+
        bool abort, allLines;
-       set<int> lines; //hold lines to be used
        set<string> labels; //holds labels to be used
-       string format, groups, sorted, scale, line, label;
-       vector<string> Groups;
+       string format, groups, sorted, scale, label, outputDir;
+       vector<string> Groups, outputNames;
 
 
 };