added parameter to chimera.uchime

[mothur.git] / heatmapcommand.cpp

diff --git a/heatmapcommand.cpp b/heatmapcommand.cpp
index 10c15d8b1dd9daed1ad21dd40b7e712b829a3ba5..cf5140a1c7a03db5603cd2358ea7797ea80701f6 100644 (file)
--- a/heatmapcommand.cpp
+++ b/heatmapcommand.cpp
@@ -52,7 +52,7 @@ string HeatMapCommand::getHelpString(){
                helpString += "The default value for groups is all the groups in your groupfile, and all labels in your inputfile will be used.\n";
                helpString += "The default value for scale is log10; your other options are log2 and linear.\n";
                helpString += "The heatmap.bin command outputs a .svg file for each label you specify.\n";
-               helpString += "Note: No spaces between parameter labels (i.e. groups), '=' and parameters (i.e.yourGroups).\n\n";
+               helpString += "Note: No spaces between parameter labels (i.e. groups), '=' and parameters (i.e.yourGroups).\n";
                return helpString;
        }
        catch(exception& e) {
@@ -83,6 +83,7 @@ HeatMapCommand::HeatMapCommand(string option) {
                
                //allow user to run help
                if(option == "help") { help(); abort = true; calledHelp = true; }
+               else if(option == "citation") { citation(); abort = true; calledHelp = true;}
                
                else {
                        vector<string> myArray = setParameters();