vector<string> setParameters();
string getCommandName() { return "hcluster"; }
string getCommandCategory() { return "Clustering"; }
- string getHelpString();
- string getCitation() { return "http://www.mothur.org/wiki/Hcluster"; }
+ string getHelpString();
+ string getOutputPattern(string);
+ string getCitation() { return "Sun Y, Cai Y, Liu L, Yu F, Farrell ML, Mckendree W, Farmerie W (2009). ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences. Nucleic Acids Res 37: e76. \nhttp://www.mothur.org/wiki/Hcluster"; }
+ string getDescription() { return "cluster your sequences into OTUs using a distance matrix"; }
+
int execute();
void help() { m->mothurOut(getHelpString()); }