ReadCluster* read;
bool abort, sorted, print_start;
- string method, fileroot, tag, distfile, format, phylipfile, columnfile, namefile, sort, showabund, timing;
+ string method, fileroot, tag, distfile, format, phylipfile, columnfile, namefile, sort, showabund, timing, outputDir;
double cutoff;
int precision, length;
ofstream sabundFile, rabundFile, listFile;