ListVector oldList;
ReadCluster* read;
- bool abort, sorted, print_start;
- string method, fileroot, tag, distfile, format, phylipfile, columnfile, namefile, sort, showabund, timing;
+ bool abort, sorted, print_start, hard;
+ string method, fileroot, tag, distfile, format, phylipfile, columnfile, namefile, sort, showabund, timing, outputDir;
double cutoff;
int precision, length;
ofstream sabundFile, rabundFile, listFile;
time_t start;
unsigned long loops;
+ vector<string> outputNames;
void printData(string label);
};