void updateMap();
vector<seqDist> getSeqsFNNN();
vector<seqDist> getSeqsAN();
- void combineFile();
- void processFile();
+ int combineFile();
+ int processFile();
//seqDist getNextDist(char*, int&, int);
RAbundVector* rabund;
vector<seqDist> mergedMin;
string partialDist;
+ MothurOut* m;
};