added shared file to catchall command

[mothur.git] / groupmap.h

diff --git a/groupmap.h b/groupmap.h
index a99ad119db44c2fd3bb6f78b696fc2d9ddf170af..d0e43c5b16a8989786146ec2026b18bbd86c8121 100644 (file)
--- a/groupmap.h
+++ b/groupmap.h
@@ -10,6 +10,7 @@
  */
 
 #include "mothur.h"
+#include "mothurout.h"
 
 /* This class is a representation of the groupfile.  It is used by all the shared commands to determine what group a 
        certain sequence belongs to. */
@@ -20,6 +21,7 @@ public:
        GroupMap(string);
        ~GroupMap();
        int readMap();
+       int readDesignMap();
        int getNumGroups();
        bool isValidGroup(string);  //return true if string is a valid group
        string getGroup(string);
@@ -31,6 +33,7 @@ public:
        int getNumSeqs(string); //return the number of seqs in a given group
                        
 private:
+       MothurOut* m;
        ifstream fileHandle;
        string groupFileName;
        int index;