*/
#include "mothur.h"
+#include "mothurout.h"
/* This class is a representation of the groupfile. It is used by all the shared commands to determine what group a
certain sequence belongs to. */
GroupMap(string);
~GroupMap();
int readMap();
+ int readDesignMap();
int getNumGroups();
bool isValidGroup(string); //return true if string is a valid group
string getGroup(string);
int getNumSeqs(string); //return the number of seqs in a given group
private:
+ MothurOut* m;
ifstream fileHandle;
string groupFileName;
int index;