modified the engine to extract the path of mothur executable if argv does not contain...

[mothur.git] / groupmap.cpp

diff --git a/groupmap.cpp b/groupmap.cpp
index 939cdb9040e67c62416f76cda30b86dbead73654..d57646e3e3dad937d3ca0fa81b26f402cfa1ad4d 100644 (file)
--- a/groupmap.cpp
+++ b/groupmap.cpp
@@ -25,13 +25,13 @@
 int GroupMap::readMap() {
                string seqName, seqGroup;
                int error = 0;
-       
+
                while(fileHandle){
-                       fileHandle >> seqName;                  //read from first column
+                       fileHandle >> seqName;  gobble(fileHandle);             //read from first column
                        fileHandle >> seqGroup;                 //read from second column
                        
                        if (m->control_pressed) {  fileHandle.close();  return 1; }
-                       
+       
                        setNamesOfGroups(seqGroup);
                        
                        it = groupmap.find(seqName);