string getStep();
string getForm();
string getSorted();
-
+ string getEnds();
+ string getProcessors();
+ string getSize();
+ string getTemplateFile();
+ string getSearch();
+ string getKSize();
+ string getAlign();
+ string getMatch();
+ string getMismatch();
+ string getGapopen();
+ string getGapextend();
string getTrump();
string getSoft();
string getFilter();
void setListFile(string);
+ void setGroupFile(string file);
void setPhylipFile(string);
void setColumnFile(string);
void setNameFile(string);
void setRabundFile(string);
void setSabundFile(string);
+ void setSharedFile(string);
void setFormat(string);
void setRandomTree(string);
void setGroups(string);
void setCalc(string);
+ void setEnds(string);
+ void setProcessors(string);
void clear();
void clearLabels();
private:
string phylipfile, columnfile, listfile, rabundfile, sabundfile, namefile, groupfile, orderfile, fastafile, nexusfile, clustalfile, treefile, sharedfile, line, label, randomtree, groups;
- string cutoff, format, precision, method, fileroot, iters, jumble, freq, calc, abund, step, form, sorted, trump, soft, filter, scale;
+ string cutoff, format, precision, method, fileroot, iters, jumble, freq, calc, abund, step, form, sorted, trump, soft, filter, scale, ends, processors, templatefile, search, ksize, align, match, size;
+ string mismatch, gapopen, gapextend;
static GlobalData* _uniqueInstance;