modified trim.seqs command

[mothur.git] / globaldata.hpp

diff --git a/globaldata.hpp b/globaldata.hpp
index af5b3835ea67b52e6d16cfd0d37f323d95e4afd1..89089ad8686a20a5ee855a1405d4800729ee325a 100644 (file)
--- a/globaldata.hpp
+++ b/globaldata.hpp
@@ -91,7 +91,9 @@ public:
        string getMaxHomoPolymer();
        string getMinLength();
        string getMaxLength();
-
+       string getFlip();
+       string getOligosFile();
+       
        void setListFile(string);
        void setGroupFile(string file); 
        void setPhylipFile(string);
@@ -121,7 +123,7 @@ public:
                
 private:
 
-       string phylipfile, columnfile, listfile, rabundfile, sabundfile, namefile, groupfile, orderfile, fastafile, treefile, sharedfile, line, label, randomtree, groups, cutoff, format, precision, method, fileroot, iters, jumble, freq, calc, abund, step, form, sorted, trump, soft, hard, scale, countends, processors, candidatefile, search, ksize, align, match, size, mismatch, gapopen, gapextend, minLength, maxLength, startPos, endPos, maxAmbig, maxHomoPolymer;
+       string phylipfile, columnfile, listfile, rabundfile, sabundfile, namefile, groupfile, orderfile, fastafile, treefile, sharedfile, line, label, randomtree, groups, cutoff, format, precision, method, fileroot, iters, jumble, freq, calc, abund, step, form, sorted, trump, soft, hard, scale, countends, processors, candidatefile, search, ksize, align, match, size, mismatch, gapopen, gapextend, minLength, maxLength, startPos, endPos, maxAmbig, maxHomoPolymer, flip, oligoFile;
 
 
        static GlobalData* _uniqueInstance;