TreeMap* gTreemap;
SequenceDB* gSequenceDB;
string inputFileName, argv;
- bool allLines, runParse, jumble;
+ bool allLines, runParse, jumble, sim;
vector<string> Estimators, Groups; //holds estimators to be used
set<string> labels; //holds labels to be used
vector<string> Treenames;
+ map<string, string> names;
string getPhylipFile();
void newRead();
private:
-
+ MothurOut* m;
string phylipfile, columnfile, listfile, rabundfile, sabundfile, namefile, groupfile, orderfile, treefile, sharedfile, format, distfile;
static GlobalData* _uniqueInstance;