changes to blastdb to make filenames given to blast unique, changes to split.abund...

[mothur.git] / globaldata.hpp

diff --git a/globaldata.hpp b/globaldata.hpp
index 0238a0aaeffa7a7e710182af82010ea058edf1df..35415c70c874039c99c758c24a77b7b43eeb6079 100644 (file)
--- a/globaldata.hpp
+++ b/globaldata.hpp
@@ -43,10 +43,11 @@ public:
        TreeMap* gTreemap;
        SequenceDB* gSequenceDB;
        string inputFileName, argv;
-       bool allLines, runParse, jumble;
+       bool allLines, runParse, jumble, sim;
        vector<string>  Estimators, Groups; //holds estimators to be used
        set<string> labels; //holds labels to be used
        vector<string> Treenames;
+       map<string, string> names;
        
        
        string getPhylipFile();
@@ -83,7 +84,7 @@ public:
        void newRead();
        
 private:
-
+       MothurOut* m;
        string phylipfile, columnfile, listfile, rabundfile, sabundfile, namefile, groupfile, orderfile, treefile, sharedfile, format, distfile;
 
        static GlobalData* _uniqueInstance;