gGroupmap = NULL;
gTree.clear();
labels.clear(); lines.clear(); groups.clear();
-
}
//saves help request
if (key == "freq" ) { freq = value; }
if (key == "method" ) { method = value; }
if (key == "fileroot" ) { fileroot = value; }
+ if (key == "abund" ) { abund = value; }
if (key == "random" ) { randomtree = value; }
- if (key == "groups" ) { groups = value; }
if (key == "calc") { calc = value; }
+
if (key == "line") {//stores lines to be used in a set
lines.clear();
splitAtDash(value, labels);
allLines = 0;
}
+
if (key == "groups") {//stores groups to be used in a vector
Groups.clear();
groups = value;
splitAtDash(value, Groups);
}
+
}
//saves the last parameter
if (key == "freq" ) { freq = value; }
if (key == "method" ) { method = value; }
if (key == "fileroot" ) { fileroot = value; }
+ if (key == "abund" ) { abund = value; }
if (key == "random" ) { randomtree = value; }
- if (key == "groups" ) { groups = value; }
if (key == "calc") { calc = value; }
//set format for shared
if ((listfile != "") && (groupfile != "")) { format = "shared"; }
+ if ((phylipfile != "") && (groupfile != "")) { format = "matrix"; }
//input defaults for calculators
if (commandName == "collect.single") {
string GlobalData::getIters() { return iters; }
string GlobalData::getJumble() { return jumble; }
string GlobalData::getFreq() { return freq; }
+string GlobalData::getAbund() { return abund; }
string GlobalData::getRandomTree() { return randomtree; }
+string GlobalData::getGroups() { return groups; }
void GlobalData::setListFile(string file) { listfile = file; inputFileName = file;}
void GlobalData::setRabundFile(string file) { rabundfile = file; inputFileName = file;}
void GlobalData::setSabundFile(string file) { sabundfile = file; inputFileName = file;}
void GlobalData::setNameFile(string file) { namefile = file; }
void GlobalData::setFormat(string Format) { format = Format; }
void GlobalData::setRandomTree(string Random) { randomtree = Random; }
-void GlobalData::setCalc(string Calc) { calc = Calc; }
+void GlobalData::setGroups(string g) { groups = g; }
+void GlobalData::setCalc(string Calc) { calc = Calc; }
/*******************************************************/
freq = "100";
method = "furthest";
fileroot = "";
- calc = "";
+ abund = "10";
}
-/*******************************************************/
+
+//*******************************************************/
/******************************************************/
void GlobalData::reset() {
freq = "100";
method = "furthest";
calc = "";
+ abund = "10";
}
/*******************************************************/
if(gorder != NULL) { delete gorder; }
}
/*******************************************************/
-
-/******************************************************/
-