string accnosfile, fastafile, namefile, groupfile, alignfile, listfile, outputDir;
bool abort;
- void readFasta();
- void readName();
- void readGroup();
- void readAlign();
- void readAccnos();
- void readList();
+ int readFasta();
+ int readName();
+ int readGroup();
+ int readAlign();
+ int readAccnos();
+ int readList();
};