fixed read.tree so that it can read trees generated by fasttree

[mothur.git] / getseqscommand.h

diff --git a/getseqscommand.h b/getseqscommand.h
index b574afe38734a789fa39985090012cff358d2e95..4f4c809e51e7f9308ae4f372bdd2195eb964f6c3 100644 (file)
--- a/getseqscommand.h
+++ b/getseqscommand.h
@@ -24,8 +24,8 @@ class GetSeqsCommand : public Command {
        private:
                set<string> names;
                vector<string> outputNames;
-               string accnosfile, fastafile, namefile, groupfile, alignfile, listfile, outputDir;
-               bool abort;
+               string accnosfile, fastafile, namefile, groupfile, alignfile, listfile, taxfile, outputDir;
+               bool abort, dups;
                
                int readFasta();
                int readName();
@@ -33,6 +33,7 @@ class GetSeqsCommand : public Command {
                int readAlign();
                int readAccnos();
                int readList();
+               int readTax();
                
 };