fixed read.tree so that it can read trees generated by fasttree

[mothur.git] / getseqscommand.h

diff --git a/getseqscommand.h b/getseqscommand.h
index 809109c486de9f00b39091b863da8a23dfc95a96..4f4c809e51e7f9308ae4f372bdd2195eb964f6c3 100644 (file)
--- a/getseqscommand.h
+++ b/getseqscommand.h
@@ -24,15 +24,16 @@ class GetSeqsCommand : public Command {
        private:
                set<string> names;
                vector<string> outputNames;
-               string accnosfile, fastafile, namefile, groupfile, alignfile, listfile, outputDir;
-               bool abort;
+               string accnosfile, fastafile, namefile, groupfile, alignfile, listfile, taxfile, outputDir;
+               bool abort, dups;
                
-               void readFasta();
-               void readName();
-               void readGroup();
-               void readAlign();
-               void readAccnos();
-               void readList();
+               int readFasta();
+               int readName();
+               int readGroup();
+               int readAlign();
+               int readAccnos();
+               int readList();
+               int readTax();
                
 };