changed blastdb.cpp to no include sequence names in blast input filenames. modified...

[mothur.git] / getseqscommand.cpp

diff --git a/getseqscommand.cpp b/getseqscommand.cpp
index 5db28888b8dbe0ac643779b1cdcbe6ae01a37389..ad9698b695815cc77459cc85d2cca1ec7cd24f67 100644 (file)
--- a/getseqscommand.cpp
+++ b/getseqscommand.cpp
@@ -45,7 +45,7 @@ string GetSeqsCommand::getHelpString(){
                helpString += "The dups parameter allows you to add the entire line from a name file if you add any name from the line. default=false. \n";
                helpString += "The get.seqs command should be in the following format: get.seqs(accnos=yourAccnos, fasta=yourFasta).\n";
                helpString += "Example get.seqs(accnos=amazon.accnos, fasta=amazon.fasta).\n";
-               helpString += "Note: No spaces between parameter labels (i.e. fasta), '=' and parameters (i.e.yourFasta).\n\n";
+               helpString += "Note: No spaces between parameter labels (i.e. fasta), '=' and parameters (i.e.yourFasta).\n";
                return helpString;
        }
        catch(exception& e) {
@@ -81,6 +81,7 @@ GetSeqsCommand::GetSeqsCommand(string option)  {
                                
                //allow user to run help
                if(option == "help") { help(); abort = true; calledHelp = true; }
+               else if(option == "citation") { citation(); abort = true; calledHelp = true;}
                
                else {
                        vector<string> myArray = setParameters();