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[mothur.git] / getseqscommand.cpp

diff --git a/getseqscommand.cpp b/getseqscommand.cpp
index a16accbb8ac724b1fce6579a7bcad9b2f5b261c7..9f2b5060fcaa715f9a2fd3fc484ba585d6322da9 100644 (file)
--- a/getseqscommand.cpp
+++ b/getseqscommand.cpp
@@ -188,8 +188,7 @@ GetSeqsCommand::GetSeqsCommand(string option)  {
                        if (accnosfile == "not open") { abort = true; }
                        else if (accnosfile == "not found") {  accnosfile = "";  m->mothurOut("You must provide an accnos file."); m->mothurOutEndLine(); abort = true; }       
                        
-                       accnosfile2 = validParameter.validFile(parameters, "accnos2", true);
-                       if (accnosfile2 == "not open") { abort = true; }
+                       if (accnosfile2 == "not found") { accnosfile2 = ""; }
                        
                        fastafile = validParameter.validFile(parameters, "fasta", true);
                        if (fastafile == "not open") { abort = true; }