int okay = 2;
if (outputDir != "") { okay++; }
+ if (inputDir != "") { okay++; }
if (parameters.size() > okay) { m->mothurOut("You may only enter one of the following: fasta, name, group, alignreport or listfile."); m->mothurOutEndLine(); abort = true; }
}
}
//get last name
- if (names.count(binnames) == 1) { newNames += binnames; }
+ if (names.count(binnames) == 1) { newNames += binnames + ","; }
//if there are names in this bin add to new list
- if (newNames != "") { newList.push_back(newNames); }
+ if (newNames != "") {
+ newNames = newNames.substr(0, newNames.length()-1); //rip off extra comma
+ newList.push_back(newNames);
+ }
}
//print new listvector