ofstream out;
ReadOTUFile* read;
OrderVector* order;
- OrderVector* lastOrder;
InputData* input;
SAbundVector* sabund;
- OptionParser* parser;
- map<string, string> parameters;
- map<string, string>::iterator it;
+
bool abort, allLines;
- set<int> lines; //hold lines to be used
set<string> labels; //holds labels to be used
- string line, label;
+ string label;
};