class GetSAbundCommand : public Command {
public:
+ GetSAbundCommand(string);
GetSAbundCommand();
~GetSAbundCommand();
+ vector<string> getRequiredParameters();
+ vector<string> getValidParameters();
+ vector<string> getRequiredFiles();
+ map<string, vector<string> > getOutputFiles() { return outputTypes; }
int execute();
+ void help();
private:
GlobalData* globaldata;
ofstream out;
ReadOTUFile* read;
OrderVector* order;
- OrderVector* lastOrder;
InputData* input;
SAbundVector* sabund;
+ vector<string> outputNames;
+ map<string, vector<string> > outputTypes;
+
+ bool abort, allLines;
+ set<string> labels; //holds labels to be used
+ string label;
+
};
#endif