void help() { m->mothurOut(getHelpString()); }
private:
- string filename, format, inputfile, listfile, rabundfile, outputDir;
+ string filename, format, inputfile, listfile, rabundfile, outputDir, countfile;
ofstream out;
- InputData* input;
- SAbundVector* sabund;
vector<string> outputNames;
bool abort, allLines;
set<string> labels; //holds labels to be used
string label;
+
+ int processList(ofstream& out);
+ int createRabund(CountTable& ct, ListVector*& list, RAbundVector*& rabund);
};