InputData* input;
vector<SharedRAbundVector*> lookup;
- bool abort, allLines;
+ bool abort, allLines, pickedGroups;
set<string> labels; //holds labels to be used
string groups, label, outputDir, scale;
vector<string> Groups;
- int getRelAbundance(vector<SharedRAbundVector*>, ofstream&);
+ int getRelAbundance(vector<SharedRAbundVector*>&, ofstream&);
+ int eliminateZeroOTUS(vector<SharedRAbundVector*>& thislookup);
};