changed reporting in ccode to only report those who are found to be chimeric by all...

[mothur.git] / getrabundcommand.h

diff --git a/getrabundcommand.h b/getrabundcommand.h
index 4b2c37f11340e8dfc940f549b2c97a7c8c339b38..92e8475d154db06761e52ada6d72120bb586ce16 100644 (file)
--- a/getrabundcommand.h
+++ b/getrabundcommand.h
@@ -33,10 +33,8 @@ private:
        InputData* input;
        ListVector* list;
        RAbundVector* rabund;
-       OptionParser* parser;
-       map<string, string> parameters;
-       map<string, string>::iterator it;
-       bool abort, allLines;
+
+       bool abort, allLines, sorted;
        set<int> lines; //hold lines to be used
        set<string> labels; //holds labels to be used
        string line, label;